[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 5,401 items for (author: xin & u)

EMDB-43753:
Yeast U1 snRNP with humanized U1C Zinc-Finger domain
Method: single particle / : Shi SS, Kuang ZL, Zhao R

PDB-8w2o:
Yeast U1 snRNP with humanized U1C Zinc-Finger domain
Method: single particle / : Shi SS, Kuang ZL, Zhao R

EMDB-36147:
Extracellular domain of gamma delta TCR
Method: single particle / : Xin W, Chi X, Huang B, Su Q, Zhou Q

EMDB-36149:
V gamma9 V delta2 TCR and CD3 complex in LMNG
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-36152:
Vgamma5 Vdelta1 TCR complex (MPDI/TMDI)
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-36153:
Vgamma5 Vdelta1 TCR complex (MPDII/TMDII)
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-36155:
Vgamma5 Vdelta1 TCR complex (MPD/TMD)
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-36156:
Vgamma5 Vdelta1 T cell receptor complex
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-37904:
Vgamma5Vdelta1 EH TCR-CD3 complex
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-37914:
T cell receptor delta 2 gamma 9 with F283A, F290A, and F291A
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-37929:
T cell receptor delta 2 gamma 9 with TCRD TM domain chimera of TRAC
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-39128:
T cell receptor V delta2 V gamma9 in GDN
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-39359:
T cell receptor V delta2 V gamma9 in GDN (DeepEMhancer)
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Su Q, Zhou Q

EMDB-39361:
Vgamma5 Vdelta1 TCR complex (MPDI/TMDI, DeepEMhancer)
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-39362:
Vgamma5 Vdelta1 TCR complex (MPDII/TMDII, DeepEMhancer)
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-39363:
V gamma9 V delta2 TCR and CD3 complex in LMNG (DeepEMhancer)
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-39367:
Vgamma5 Vdelta1 TCR-CD3 complex (EH mutant, DeepEMhancer)
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

PDB-8jbv:
Extracellular domain of gamma delta TCR
Method: single particle / : Xin W, Chi X, Huang B, Su Q, Zhou Q

PDB-8jc0:
V gamma9 V delta2 TCR and CD3 complex in LMNG
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

PDB-8jcb:
Vgamma5 Vdelta1 T cell receptor complex
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

PDB-8wxe:
Vgamma5Vdelta1 EH TCR-CD3 complex
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

PDB-8wy0:
T cell receptor delta 2 gamma 9 with F283A, F290A, and F291A
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

PDB-8wyi:
T cell receptor delta 2 gamma 9 with TCRD TM domain chimera of TRAC
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

PDB-8yc0:
T cell receptor V delta2 V gamma9 in GDN
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-36850:
SARS-CoV-2 Omicron BA.1 spike protein in complex with a self-assembling trivalent nanobody Tr67
Method: single particle / : Jiang XY, Qin Q, Qian JQ, Zhu HX, Huang Q

EMDB-39364:
T cell receptor delta 2 gamma 9 with F283A, F290A, and F291A (DeepEMhancer)
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-39366:
T cell receptor delta 2 gamma 9 with TCRD TM domain chimera of TRAC (DeepEMhancer)
Method: single particle / : Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-36008:
SIDT1 protein
Method: single particle / : Zhang JT, Jiang DH

EMDB-36009:
transport T2
Method: single particle / : Jiang DH, Zhang JT

PDB-8j6m:
SIDT1 protein
Method: single particle / : Zhang JT, Jiang DH

PDB-8j6o:
transport T2
Method: single particle / : Jiang DH, Zhang JT

EMDB-39368:
Extracellular domain of Vgamma5 Vdelta1 TCR (DeepEMhancer)
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-37342:
Structural mechanism of inhibition of the Rho transcription termination factor by Rof
Method: single particle / : Zhang J, Wang C

PDB-8w8d:
Structural mechanism of inhibition of the Rho transcription termination factor by Rof
Method: single particle / : Zhang J, Wang C

EMDB-36849:
Nipah virus Attachment glycoprotein with 41-6 antibody fragment
Method: single particle / : Sun MM

PDB-8k3c:
Nipah virus Attachment glycoprotein with 41-6 antibody fragment
Method: single particle / : Sun MM

EMDB-37985:
Cryo-EM structure of adenosine receptor A3AR bound to CF101
Method: single particle / : Cai H, Xu Y, Xu HE

EMDB-37986:
Cryo-EM structure of adenosine receptor A3AR bound to CF102
Method: single particle / : Cai H, Xu Y, Xu HE

PDB-8x16:
Cryo-EM structure of adenosine receptor A3AR bound to CF101
Method: single particle / : Cai H, Xu Y, Xu HE

PDB-8x17:
Cryo-EM structure of adenosine receptor A3AR bound to CF102
Method: single particle / : Cai H, Xu Y, Xu HE

EMDB-37130:
Cryo-EM structure of the human parainfluenza virus hPIV3 L-P polymerase in dimeric form
Method: single particle / : Xie J, Wang L, Zhai G, Wu D, Lin Z, Wang M, Yan X, Gao L, Huang X, Fearns R, Chen S

EMDB-37131:
Cryo-EM structure of the human parainfluenza virus hPIV3 L-P polymerase in monomeric form
Method: single particle / : Xie J, Wang L, Zhai G, Wu D, Lin Z, Wang M, Yan X, Gao L, Huang X, Fearns R, Chen S

PDB-8kdb:
Cryo-EM structure of the human parainfluenza virus hPIV3 L-P polymerase in dimeric form
Method: single particle / : Xie J, Wang L, Zhai G, Wu D, Lin Z, Wang M, Yan X, Gao L, Huang X, Fearns R, Chen S

PDB-8kdc:
Cryo-EM structure of the human parainfluenza virus hPIV3 L-P polymerase in monomeric form
Method: single particle / : Xie J, Wang L, Zhai G, Wu D, Lin Z, Wang M, Yan X, Gao L, Huang X, Fearns R, Chen S

EMDB-43811:
Structure of human calcium-sensing receptor in complex with chimeric Gq (miniGisq) protein in nanodiscs
Method: single particle / : Zuo H, Park J, Frangaj A, Ye J, Lu G, Manning JJ, Asher WB, Lu Z, Hu G, Wang L, Mendez J, Eng E, Zhang Z, Lin X, Grasucci R, Hendrickson WA, Clarke OB, Javitch JA, Conigrave AD, Fan QR

EMDB-43836:
Consensus map of human CaSR-miniGisq complex in nanodiscs
Method: single particle / : Zuo H, Park J, Frangaj A, Ye J, Lu G, Manning JJ, Asher WB, Lu Z, Hu G, Wang L, Mendez J, Eng E, Zhang Z, Lin X, Grasucci R, Hendrickson WA, Clarke OB, Javitch JA, Conigrave AD, Fan QR

EMDB-43837:
Local refinement map of CaSR extracellular domain in nanodisc-reconstituted human CaSR-miniGisq complex
Method: single particle / : Zuo H, Park J, Frangaj A, Ye J, Lu G, Manning JJ, Asher WB, Lu Z, Hu G, Wang L, Mendez J, Eng E, Zhang Z, Lin X, Grasucci R, Hendrickson WA, Clarke OB, Javitch JA, Conigrave AD, Fan QR

EMDB-43840:
Local refinement map of CaSR transmembrane domain in nanodisc-reconstituted human CaSR-miniGisq complex
Method: single particle / : Zuo H, Park J, Frangaj A, Ye J, Lu G, Manning JJ, Asher WB, Lu Z, Hu G, Wang L, Mendez J, Eng E, Zhang Z, Lin X, Grasucci R, Hendrickson WA, Clarke OB, Javitch JA, Conigrave AD, Fan QR

EMDB-43841:
Local refinement map of G protein in nanodisc-reconstituted human CaSR-miniGisq complex
Method: single particle / : Zuo H, Park J, Frangaj A, Ye J, Lu G, Manning JJ, Asher WB, Lu Z, Hu G, Wang L, Mendez J, Eng E, Zhang Z, Lin X, Grasucci R, Hendrickson WA, Clarke OB, Javitch JA, Conigrave AD, Fan QR

EMDB-43897:
Consensus map of human CaSR-miniGis complex in nanodiscs
Method: single particle / : Zuo H, Park J, Frangaj A, Ye J, Lu G, Manning JJ, Asher WB, Lu Z, Hu G, Wang L, Mendez J, Eng E, Zhang Z, Lin X, Grasucci R, Hendrickson WA, Clarke OB, Javitch JA, Conigrave AD, Fan QR

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more